miRDeep2

miRBase precursor idClicking this field will display a pdf of the structure and read signature of the miRNA.	total read countthis is the sum of read counts for the mature and star miRNAs.	mature read count(s)this is the number of reads that map to the miRNA hairpin and are contained in the sequence covered by the mature miRNA, including 2 nts upstream and 5 nts downstream. If more than one mature sequence is given this will be a comma separated list. In parenthesis are normalized read counts shown.	star read countthis is the number of reads that map to the miRNA hairpin and are contained in the sequence covered by the star miRNA, including 2 nts upstream and 5 nts downstream. This field is empty unless a reference star miRNA was given as input to quantifier.pl. If more than one mature sequence is given this will be a comman separated list	remaining readsthis is the number of reads that did not map to any of the mature and star sequences	UCSC browserif a species name was input to miRDeep2, then clicking this field will initiate a UCSC blat search of the miRNA precursor sequence against the reference genome.	NCBI blastnclicking this field will initiate a NCBI blastn search of the miRNA precursor sequence against the nr/nt database (non-redundant collection of all NCBI nucleotide sequences).	miRBase mature sequence(s)this is/are the mature miRNA sequence(s) input to quantifier.pl.	miRBase star sequence(s)this is/are the star miRNA sequence(s) input to quantifier.pl. This field is empty unless a reference star miRNA was given as input to quantifier.pl.	miRBase precursor sequencethis is the precursor miRNA sequence input to quantifier.pl.
ath-MIR393a	183	id seq seq (norm) ath-miR393b 77.00 86129.75 ath-miRf10114-akr 29.00 32438.48 ath-miR393a 77.00 86129.75	-	0	-	blast	uccaaagggaucgcauugaucc gaucaugcuaucucuuugga uccaaagggaucgcauugaucc	-	agaggaaggauccaaagggaucgcauugauccuaauuaaggugaauucuccccauauuuucuuuauaauuggcaaauaaaucacaaaaauuugcuugguuuuggaucaugcuaucucuuuggauucauccuuc
ath-MIRf10114-akr	183	id seq seq (norm) ath-miR393b 77.00 86129.75 ath-miRf10114-akr 29.00 32438.48 ath-miR393a 77.00 86129.75	-	0	-	blast	uccaaagggaucgcauugaucc gaucaugcuaucucuuugga uccaaagggaucgcauugaucc	-	gaggaaggauccaaagggaucgcauugauccuaauuaaggugaauucuccccauauuuucuuuauaauuggcaaauaaaucacaaaaauuugcuugguuuuggaucaugcuaucucuuuggauucauccuu
ath-MIRf10187-akr	154	id seq seq (norm) ath-miR393b 77.00 86129.75 ath-miRf10187-akr 0 0 ath-miR393a 77.00 86129.75	-	0	-	blast	uccaaagggaucgcauugaucc gaucaugcgaucucuuuggau uccaaagggaucgcauugaucc	-	uagagaaaggauccaaagggaucgcauugauccuaauuaagcugauuuauuccccaauaauuguuuuuuuuuuccuucucaaucgaaagauggaagaaaaacaaauuccaaacauuuugcuuacuuuuccggaucaugcgaucucuuuggauucauucuuug
ath-MIR393b	154	id seq seq (norm) ath-miR393b 77.00 86129.75 ath-miRf10187-akr 0 0 ath-miR393a 77.00 86129.75	-	0	-	blast	uccaaagggaucgcauugaucc gaucaugcgaucucuuuggau uccaaagggaucgcauugaucc	-	agagaaaggauccaaagggaucgcauugauccuaauuaagcugauuuauuccccaauaauuguuuuuuuuuuccuucucaaucgaaagauggaagaaaaacaaauuccaaacauuuugcuuacuuuuccggaucaugcgaucucuuuggauucauucuuu
ath-MIR156e	24	id seq seq (norm) ath-miR156a 4.00 4474.27 ath-miR156e 4.00 4474.27 ath-miR156d 4.00 4474.27 ath-miR156b 4.00 4474.27 ath-miR156f 4.00 4474.27 ath-miR156c 4.00 4474.27	-	0	-	blast	ugacagaagagagugagcac ugacagaagagagugagcac ugacagaagagagugagcac ugacagaagagagugagcac ugacagaagagagugagcac ugacagaagagagugagcac	-	aggaggugacagaagagagugagcacacauggugguuucuugcaugcuuuuuugauuaggguuucaugcuugaagcuaugugugcuuacucucucucugucaccccu
ath-MIR156d	24	id seq seq (norm) ath-miR156a 4.00 4474.27 ath-miR156e 4.00 4474.27 ath-miRf10567-akr 0 0 ath-miR156d 4.00 4474.27 ath-miR156b 4.00 4474.27 ath-miR156f 4.00 4474.27 ath-miR156c 4.00 4474.27	-	0	-	blast	ugacagaagagagugagcac ugacagaagagagugagcac gcgugcucacucucuuuuug ugacagaagagagugagcac ugacagaagagagugagcac ugacagaagagagugagcac ugacagaagagagugagcac	-	gaugggggaaaagaaguugacagaagagagugagcacacaaaggggaaguuguauaaaaguuuuguauaugguugcuuuugcgugcucacucucuuuuugucauaacuucuccuucau
ath-MIRf10257-akr	24	id seq seq (norm) ath-miR156e 4.00 4474.27 ath-miR156a 4.00 4474.27 ath-miR156d 4.00 4474.27 ath-miR156f 4.00 4474.27 ath-miR156b 4.00 4474.27 ath-miRf10257-akr 0 0 ath-miR156c 4.00 4474.27 ath-miRf10256-akr 0 0	-	0	-	blast	ugacagaagagagugagcac ugacagaagagagugagcac ugacagaagagagugagcac ugacagaagagagugagcac ugacagaagagagugagcac gugugcucacucucuauccg ugacagaagagagugagcac gcuaugugugcucacucucu	-	ggugacagaagagagugagcacacaugguggcuuucuugcauauuugaagguuccaugcuugaagcuaugugugcucacucucuauccgucacc
ath-MIRf10256-akr	24	id seq seq (norm) ath-miR156e 4.00 4474.27 ath-miR156a 4.00 4474.27 ath-miR156d 4.00 4474.27 ath-miR156f 4.00 4474.27 ath-miR156b 4.00 4474.27 ath-miRf10257-akr 0 0 ath-miR156c 4.00 4474.27 ath-miRf10256-akr 0 0	-	0	-	blast	ugacagaagagagugagcac ugacagaagagagugagcac ugacagaagagagugagcac ugacagaagagagugagcac ugacagaagagagugagcac gugugcucacucucuauccg ugacagaagagagugagcac gcuaugugugcucacucucu	-	ggugacagaagagagugagcacacaugguggcuuucuugcauauuugaagguuccaugcuugaagcuaugugugcucacucucuauccgucacc
ath-MIRf10567-akr	24	id seq seq (norm) ath-miR156a 4.00 4474.27 ath-miR156e 4.00 4474.27 ath-miRf10567-akr 0 0 ath-miR156d 4.00 4474.27 ath-miR156b 4.00 4474.27 ath-miR156f 4.00 4474.27 ath-miR156c 4.00 4474.27	-	0	-	blast	ugacagaagagagugagcac ugacagaagagagugagcac gcgugcucacucucuuuuug ugacagaagagagugagcac ugacagaagagagugagcac ugacagaagagagugagcac ugacagaagagagugagcac	-	gaaguugacagaagagagugagcacacaaaggggaaguuguauaaaaguuuuguauaugguugcuuuugcgugcucacucucuuuuugucauaacuuc
ath-MIR156b	24	id seq seq (norm) ath-miR156a 4.00 4474.27 ath-miR156e 4.00 4474.27 ath-miR156d 4.00 4474.27 ath-miR156b 4.00 4474.27 ath-miR156f 4.00 4474.27 ath-miR156c 4.00 4474.27	-	0	-	blast	ugacagaagagagugagcac ugacagaagagagugagcac ugacagaagagagugagcac ugacagaagagagugagcac ugacagaagagagugagcac ugacagaagagagugagcac	-	gcuagaagagggagagauggugauugaggaaugcaacagagaaaacugacagaagagagugagcacaugcaggcacuguuaugugucuauaacuuugcgugugcgugcucaccucucuuucugucaguugccuaucucugccugcuugaccucucucucucucucucucucucaaauuuggcu
ath-MIR156c	24	id seq seq (norm) ath-miR156a 4.00 4474.27 ath-miR156e 4.00 4474.27 ath-miR156d 4.00 4474.27 ath-miR156b 4.00 4474.27 ath-miR156f 4.00 4474.27 ath-miR156c 4.00 4474.27	-	0	-	blast	ugacagaagagagugagcac ugacagaagagagugagcac ugacagaagagagugagcac ugacagaagagagugagcac ugacagaagagagugagcac ugacagaagagagugagcac	-	cgcauagaaacugacagaagagagugagcacacaaaggcacuuugcauguucgaugcauuugcuucucuugcgugcucacugcucuaucugucagauuccggcu
ath-MIR156f	24	id seq seq (norm) ath-miR156e 4.00 4474.27 ath-miR156a 4.00 4474.27 ath-miR156d 4.00 4474.27 ath-miR156f 4.00 4474.27 ath-miR156b 4.00 4474.27 ath-miRf10257-akr 0 0 ath-miR156c 4.00 4474.27 ath-miRf10256-akr 0 0	-	0	-	blast	ugacagaagagagugagcac ugacagaagagagugagcac ugacagaagagagugagcac ugacagaagagagugagcac ugacagaagagagugagcac gugugcucacucucuauccg ugacagaagagagugagcac gcuaugugugcucacucucu	-	gaguggugaggaauugauggugacagaagagagugagcacacaugguggcuuucuugcauauuugaagguuccaugcuugaagcuaugugugcucacucucuauccgucacccccuucucucccucucccuc
ath-MIR156a	24	id seq seq (norm) ath-miR156a 4.00 4474.27 ath-miR156e 4.00 4474.27 ath-miR156d 4.00 4474.27 ath-miR156b 4.00 4474.27 ath-miR156f 4.00 4474.27 ath-miR156c 4.00 4474.27	-	0	-	blast	ugacagaagagagugagcac ugacagaagagagugagcac ugacagaagagagugagcac ugacagaagagagugagcac ugacagaagagagugagcac ugacagaagagagugagcac	-	caagagaaacgcaaagaaacugacagaagagagugagcacacaaaggcaauuugcauaucauugcacuugcuucucuugcgugcucacugcucuuucugucagauuccggugcugaucucuuu
ath-MIR156g	4	id seq seq (norm) ath-miR156g 4.00 4474.27	-	0	-	blast	cgacagaagagagugagcac	-	auaacgaaggcgacagaagagagugagcacacauggcucuuuuucuagcaugcucaugcucgaaagcucugcgugcuuacucucuucuugucuccugcucucu